{"id":647,"date":"2017-09-28T07:05:05","date_gmt":"2017-09-28T07:05:05","guid":{"rendered":"http:\/\/jsr.isrt.ac.bd\/?post_type=article&p=647"},"modified":"2017-09-28T08:03:14","modified_gmt":"2017-09-28T08:03:14","slug":"nonparametric-tests-ordered-diversity-genomic-sequence","status":"publish","type":"article","link":"http:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/","title":{"rendered":"Nonparametric tests for ordered diversity in a genomic sequence"},"content":{"rendered":"

In genomics (SNP and RNA amino acid studies), typically, we encounter enormously
\nlarge dimensional qualitative categorical data models without an ordering
\nof the categories, thus preempting the use of conventional measures of dispersion
\n(variation or diversity) as well as other measures which assume some latent trait
\nvariable(s). The Gini-Simpson diversity measure, often advocated for diversity
\nanalysis in one-dimensional models, has been adapted to formulate measures of
\ndiversity and co-diversity based on the Hamming distance in the multidimensional
\nsetup. Based on certain (molecular) biologically interpretable monotone diversity
\nperspectives, an ordering of the Gini-Simpson measures across the genome (positions)
\nis formulated in a meaningful way. Motivated by this feature, nonparametric
\ninference for such ordered measures is considered here, and their applications
\nstressed.<\/p>\n

Fulltext<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

In genomics (SNP and RNA amino acid studies), typically, we encounter enormously large dimensional qualitative categorical data models without an ordering of the categories, thus preempting the use of conventional measures of dispersion (variation or diversity) as well as other measures which assume some latent trait variable(s). The Gini-Simpson diversity measure, often advocated for diversity […]<\/p>\n","protected":false},"author":2,"featured_media":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","format":"standard","meta":{"_mi_skip_tracking":false,"_exactmetrics_sitenote_active":false,"_exactmetrics_sitenote_note":"","_exactmetrics_sitenote_category":0,"footnotes":""},"issuem_issue":[21],"issuem_issue_categories":[],"issuem_issue_tags":[],"class_list":["post-647","article","type-article","status-publish","format-standard","hentry","issuem_issue-v39n2"],"yoast_head":"\nNonparametric tests for ordered diversity in a genomic sequence - JSR<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Nonparametric tests for ordered diversity in a genomic sequence - JSR\" \/>\n<meta property=\"og:description\" content=\"In genomics (SNP and RNA amino acid studies), typically, we encounter enormously large dimensional qualitative categorical data models without an ordering of the categories, thus preempting the use of conventional measures of dispersion (variation or diversity) as well as other measures which assume some latent trait variable(s). The Gini-Simpson diversity measure, often advocated for diversity […]\" \/>\n<meta property=\"og:url\" content=\"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/\" \/>\n<meta property=\"og:site_name\" content=\"JSR\" \/>\n<meta property=\"article:modified_time\" content=\"2017-09-28T08:03:14+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/\",\"url\":\"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/\",\"name\":\"Nonparametric tests for ordered diversity in a genomic sequence - JSR\",\"isPartOf\":{\"@id\":\"https:\/\/jsr.isrt.ac.bd\/#website\"},\"datePublished\":\"2017-09-28T07:05:05+00:00\",\"dateModified\":\"2017-09-28T08:03:14+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/jsr.isrt.ac.bd\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Articles\",\"item\":\"https:\/\/jsr.isrt.ac.bd\/article\/\"},{\"@type\":\"ListItem\",\"position\":3,\"name\":\"Nonparametric tests for ordered diversity in a genomic sequence\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/jsr.isrt.ac.bd\/#website\",\"url\":\"https:\/\/jsr.isrt.ac.bd\/\",\"name\":\"JSR\",\"description\":\"Journal of Statistical Research\",\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/jsr.isrt.ac.bd\/?s={search_term_string}\"},\"query-input\":\"required name=search_term_string\"}],\"inLanguage\":\"en-US\"}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Nonparametric tests for ordered diversity in a genomic sequence - JSR","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/","og_locale":"en_US","og_type":"article","og_title":"Nonparametric tests for ordered diversity in a genomic sequence - JSR","og_description":"In genomics (SNP and RNA amino acid studies), typically, we encounter enormously large dimensional qualitative categorical data models without an ordering of the categories, thus preempting the use of conventional measures of dispersion (variation or diversity) as well as other measures which assume some latent trait variable(s). The Gini-Simpson diversity measure, often advocated for diversity […]","og_url":"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/","og_site_name":"JSR","article_modified_time":"2017-09-28T08:03:14+00:00","twitter_card":"summary_large_image","twitter_misc":{"Est. reading time":"1 minute"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/","url":"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/","name":"Nonparametric tests for ordered diversity in a genomic sequence - JSR","isPartOf":{"@id":"https:\/\/jsr.isrt.ac.bd\/#website"},"datePublished":"2017-09-28T07:05:05+00:00","dateModified":"2017-09-28T08:03:14+00:00","breadcrumb":{"@id":"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/"]}]},{"@type":"BreadcrumbList","@id":"https:\/\/jsr.isrt.ac.bd\/article\/nonparametric-tests-ordered-diversity-genomic-sequence\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/jsr.isrt.ac.bd\/"},{"@type":"ListItem","position":2,"name":"Articles","item":"https:\/\/jsr.isrt.ac.bd\/article\/"},{"@type":"ListItem","position":3,"name":"Nonparametric tests for ordered diversity in a genomic sequence"}]},{"@type":"WebSite","@id":"https:\/\/jsr.isrt.ac.bd\/#website","url":"https:\/\/jsr.isrt.ac.bd\/","name":"JSR","description":"Journal of Statistical Research","potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/jsr.isrt.ac.bd\/?s={search_term_string}"},"query-input":"required name=search_term_string"}],"inLanguage":"en-US"}]}},"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"http:\/\/jsr.isrt.ac.bd\/wp-json\/wp\/v2\/article\/647","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/jsr.isrt.ac.bd\/wp-json\/wp\/v2\/article"}],"about":[{"href":"http:\/\/jsr.isrt.ac.bd\/wp-json\/wp\/v2\/types\/article"}],"author":[{"embeddable":true,"href":"http:\/\/jsr.isrt.ac.bd\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"http:\/\/jsr.isrt.ac.bd\/wp-json\/wp\/v2\/comments?post=647"}],"version-history":[{"count":0,"href":"http:\/\/jsr.isrt.ac.bd\/wp-json\/wp\/v2\/article\/647\/revisions"}],"wp:attachment":[{"href":"http:\/\/jsr.isrt.ac.bd\/wp-json\/wp\/v2\/media?parent=647"}],"wp:term":[{"taxonomy":"issuem_issue","embeddable":true,"href":"http:\/\/jsr.isrt.ac.bd\/wp-json\/wp\/v2\/issuem_issue?post=647"},{"taxonomy":"issuem_issue_categories","embeddable":true,"href":"http:\/\/jsr.isrt.ac.bd\/wp-json\/wp\/v2\/issuem_issue_categories?post=647"},{"taxonomy":"issuem_issue_tags","embeddable":true,"href":"http:\/\/jsr.isrt.ac.bd\/wp-json\/wp\/v2\/issuem_issue_tags?post=647"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}